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SIB Swiss Institute of Bioinformatics | Expasy

Operated by the SIB Swiss Institute of Bioinformatics, Expasy, the Swiss Bioinformatics Resource Portal, provides access to scientific databases and software tools in different areas of life sciences.

https://www.expasy.org/ 

ExPASy - ENZYME

ENZYME is a repository of information relative to the nomenclature of enzymes. It is primarily based on the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB) and it describes eac...

https://enzyme.expasy.org/ 

proteins and proteomes - SIB Swiss Institute of ... - Expasy

proteins and proteomes - SIB Swiss Institute of Bioinformatics | Expasy. You can also query "proteins and proteomes" into a selection of SIB databases in parallel. Hide Hits section. “proteins and proteomes” queried in 19 SIB databas...

https://www.expasy.org/search/protei... 

ExPASy - PROSITE

Jun 02, 2021  · PROSITE is complemented by ProRule , a collection of rules based on profiles and patterns, which increases the discriminatory power of profiles and patterns by providing additional information about functionally and/...

https://prosite.expasy.org/index.htm... 

ExPASy · bio.tools

ExPASy is the bioinformatics resource portal for access to programs and databases for the analysis of proteomics, genomics, phylogeny, systems biology, population genetics, transcriptomics etc.

https://bio.tools/expasy#! 

ExPASy - ProtParam tool

ExPASy - ProtParam tool

https://web.expasy.org/protparam/ 

ViralZone

Publication: ViralZone: a knowledge resource to understand virus diversity. Hulo C, de Castro E, Masson P, Bougueleret L, Bairoch A, Xenarios I, Le Mercier P. …

https://viralzone.expasy.org/ 

FORTHERECORD MPEx: A tool for exploring membrane proteins

FORTHERECORD MPEx: A tool for exploring membrane proteins Craig Snider,1 Sajith Jayasinghe,2 Kalina Hristova,3 and Stephen H. White1* 1Department of Physiology and Biophysics, Center for Biomembrane Systems, University of California, Irvine, Calif...

https://blanco.biomol.uci.edu/reprin... 

PROSITE

Site [ info] phosphorylation at position 1. Skip flag [ info] TRUE. Version [ info] 1. View entry in original PROSITE format. View entry in raw text format (no links) Direct ScanProsite submission.

https://prosite.expasy.org/PS00005 

Immunoglobulin heavy constant delta - glyconnect.expasy.org

Source; Blood Plasma (UBERON_0001969) ; Reported structure; N-Linked / Complex / Gal(b1-4)GlcNAc(b1-2)Man(a1-6)[GlcNAc(b1-2)Man(a1-3)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6 ...

https://glyconnect.expasy.org/immuno... 

Expasy, the Swiss Bioinformatics Resource Portal, as ...

Apr 13, 2021  · In this landscape, the ExPASy portal pioneered. It was created in 1993 referred to as ‘the Expert Protein Analysis System’ with a primary focus on protein knowledge . It was the first life science website - and a...

https://academic.oup.com/nar/article... 

bio.tools · bio.tools

This site uses cookies. By continuing to browse the site you are agreeing to our use of cookies. Find out more here.

https://bio.tools/expasy 

SWISS-MODEL Interactive Workspace

The SWISS-MODEL Interactive Workspace provides a personal area for each user in which protein homology models can be built and the results of completed modelling projects are stored and visualized.

https://swissmodel.expasy.org/intera... 

ENZYME - 3.1.1.3 Triacylglycerol lipase - ExPASy - ENZYME

ENZYME entry: EC 3.1.1.3. Triacylglycerol lipase. Lipase. Tributyrase. Triglyceride lipase. The enzyme is found in diverse organisms including animals, plants, fungi, and bacteria. It hydrolyzes triglycerides into diglycerides and subsequently int...

https://enzyme.expasy.org/EC/3.1.1.3 

The Make2D-DB II Package - Home Page - Expasy

Dec 02, 2011  · Make2D-DB II is an environment to create, convert, publish, interconnect and keep up-to-date two-dimensional gel electrophoresis (2D-PAGE) databases. It converts data from various formats into a relational format. Th...

https://world-2dpage.expasy.org/make... 

ExPASy: the proteomics server for in-depth protein ...

Jul 01, 2003  · One of the SIB's windows to the world is the ExPASy server, which focuses on proteins and proteomics, and provides access to a variety of databases and analysis tools. One of the major assets of ExPASy is the high de...

https://academic.oup.com/nar/article... 

ExPASy - Tools

The tools marked by are local to the ExPASy server. The remaining tools are developed and hosted on other servers. [Protein identification and characterization] [DNA -> Protein] [Similarity searches] [Pattern and profile searches] [Post-transla...

http://pdg.cnb.uam.es/cursos/Leon_20... 

ExPASy: The proteomics server for in-depth protein ...

ExPASy databases include SWISS-PROT and TrEMBL, SWISS-2DPAGE, PROSITE, ENZYME and the SWISS-MODEL repository. Analysis tools are available for specific tasks relevant to proteomics, similarity searches, pattern and profile searches, post-translati...

https://pubmed.ncbi.nlm.nih.gov/1282... 

World-2DPAGE Constellation: World-2DPAGE Portal - Expasy

World-2DPAGE Portal is a Dynamic Portal to query simultaneously World-Wide Gel-based Proteomics Databases. This virtual database puts together over 250 maps for 23 species, totalizing nearly 40'000 identified spots, making it the biggest gel-based...

https://world-2dpage.expasy.org/port... 

Help | SWISS-MODEL

The SWISS-MODEL Workspace. The SWISS-MODEL Workspace (Waterhouse et al.) is a personal web-based working environment, where several modelling projects can be carried out in parallel.Protein sequence and structure databases necessary for modelling ...

https://swissmodel.expasy.org/docs/h... 

Expasy - VenomZone

A knowledge resource to understand toxin diversity. VenomZone is a free web resource that provides information on venoms from six taxa (snakes, scorpions, spiders, cone snails, sea anemones and insects), as well as on their targets.

https://venomzone.expasy.org/ 

MIRAGE search - Expasy

The Basic Search allows you to search UniCarb-DB using a combination of fields: Taxonomy, Tissue and References. Choose one or several options from the list below and click Search

https://unicarb-db.expasy.org/search 

Expasy - Wikipedia

Expasy is an online bioinformatics resource operated by the SIB Swiss Institute of Bioinformatics.It is an extensible and integrative portal which provides access to over 160 databases and software tools and supports a range of life science and cl...

https://en.wikipedia.org/wiki/ExPASy 

ClustalW Server - Vital-IT

ClustalW Server. Scoring matrix : Blosum Pam Gonnet Identity. Opening gap penalty : Extending gap penalty : End gap penalty : Separation gap penalty : Output format :

https://embnet.vital-it.ch/software/... 

(Expasy) - SlideShare

Apr 21, 2018  · history • expasy was created in august 1993: it was one of the first web servers for biological sciences. since that date it has undergone constant modifications and improvements • in june 2011 the sib expasy bio...

https://www.slideshare.net/MazharSha... 

Swiss Mass Abacus - Expasy

All masses are monoisotopic and in Dalton. (Reference for Monosaccharides masses: ExPASy GlycoMod; Reference for Amino Acid masses: Mascot) Text input can be provided via the interface as well as typed via computer keyboard.The usual keyboard shor...

https://glycoproteome.expasy.org/swi... 

PepSweetener "how-to" - Expasy

Please note that due to its size the dataset is stored at one of the ExPASy servers. Search Parameters. The input is a list of hypothetical intact N-glycopeptide masses / precursor ions – The format of this query list is comma separated experime...

https://glycoproteome.expasy.org/pep... 

Expasy - COVID-19

SIB experts part of the fight against the COVID-19 pandemic. SIB experts and resources are taking part in the global effort to develop dedicated data services, analysis tools, training offer - and to improve knowledge sharing to fight the COVID-19...

https://covid-19-sparql.expasy.org/ 

Evolutionary changes in heat-inducible gene expression in ...

Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature Michelle M. Riehle,1 Albert F. Bennett,1 Richard E. Lenski,2 and Anthony D. Long1 1Department of Ecology and Evolutionary Biology, Univ...

https://compphys.bio.uci.edu/bennett... 

The Amino Acid Masses - Expasy

1-letter code 3-letter code Chemical formula Monoisotopic Average; A: Ala: C 3 H 5 ON: 71.03711: 71.0788: R: Arg: C 6 H 12 ON 4: 156.10111: 156.1875: N: Asn: C 4 H 6 ...

http://education.expasy.org/student_... 

Search SugarBindDB - Expasy

Glycan Builder: Build and search a glycan structure using the new interface. Curated Publications: Search the growing list of publications, associated structures, and metadata.

https://sugarbind.expasy.org/query 

ExPASy - an overview | ScienceDirect Topics

Marco Wiltgen, in Encyclopedia of Bioinformatics and Computational Biology, 2019. Bioinformatics Tools for Protein Structure Prediction and Analysis. A number of bioinformatics tools for proteomic analysis are available at the ExPASy server at web...

https://www.sciencedirect.com/topics... 

GitHub - zmactep/ProtParam.jl: ExPASy tool clone written ...

Jul 13, 2020  · ExPASy tool clone written on Julia. Contribute to zmactep/ProtParam.jl development by creating an account on GitHub.

https://github.com/zmactep/ProtParam... 

OligoCalc: Oligonucleotide Properties Calculator

Dec 30, 2015  · If you would like an accurate MW for restriction enzyme cut DNA, please use: Molecular Weight = (A n x 313.21) + (T n x 304.2) + (C n x 289.18) + (G n x 329.21) - 61.96 + 79.0. The addition of 79.0 gm/mole to the oli...

http://biotools.nubic.northwestern.e... 

ExPASy - What does ExPASy stand for? The Free Dictionary

Looking for online definition of ExPASy or what ExPASy stands for? ExPASy is listed in the World's largest and most authoritative dictionary database of abbreviations and acronyms The Free Dictionary

https://acronyms.thefreedictionary.c... 

HAMAP-Scan - Expasy

HAMAP. Classify (and annotate) your own protein sequences by using the collection of HAMAP family profiles and annotation rules [ help ] . => Retrieve results of a previous scan . STEP 1 - Enter PROTEIN sequences [? ] STEP 2 - Choose 'Scan' or ...

https://hamap.expasy.org/hamap_scan.... 

HAMAP proteomes - Expasy

HAMAP-Scan. Proteomes. Documentation. Downloads. About. Proteomes. The proteome pages provide curated information on all bacterial and archaeal UniProtKB reference proteomes .

https://hamap.expasy.org/proteomes.h... 

National Institutes of Health

National Institutes of Health

https://pubmed.ncbi.nlm.nih.gov/2266... 

BoxShade Server - Vital-IT

When pasting MSF or ClustalW files, please make sure that the pasted text starts with the header line of the alignment and contains no extra blank lines at the bottom.

https://embnet.vital-it.ch/software/... 

Swiss PDB Viewer - Home

Description. Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare thei...

https://spdbv.vital-it.ch/ 

Protein Modelling using Swiss Model [ Expasy ] - YouTube

Swiss model is an online automated tool for modelling and analysis of the modelled protein structure. Updates on your work will be sent to your email account...

https://www.youtube.com/watch?v=XNqt... 

Protein Identification and Analysis Tools on the ExPASy ...

Protein identification and analysis software performs a central role in the investigation of proteins from two-dimensional (2-D) gels and mass spectrometry. For protein identification, the user matches certain empirically acquired information agai...

https://link.springer.com/protocol/1... 

INS - Insulin precursor - Homo sapiens (Human) - INS gene ...

Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and …

https://www.uniprot.org/uniprot/P013... 

GlyConnect

Site Core / Type Cartoon Composition Biological associations; Undefined site N-Linked / Complex Hex:5 HexNAc:4 dHex:1 NeuAc:2

https://glyconnect.expasy.org/immuno... 

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